Detailed information of SNP:
|
SNP ID:
sf1009441047(Gbrowse)
Chromosome: chr10 Position: 9441047 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 87.01% | 12.99% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 495 | 86.67% | 13.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009441047 | C->T | INTERGENIC | None |