Detailed information of SNP:
|
SNP ID:
sf1009443513(Gbrowse)
Chromosome: chr10 Position: 9443513 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.27% | 45.73% |
| All Indica | 799 | 82.10% | 17.90% |
| All Japonica | 496 | 7.66% | 92.34% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009443513 | C->T | LOC_Os10g18720(LOC_Os10g18720.1) | Synonymous |