Detailed information of SNP:
SNP ID:
sf1009444002(Gbrowse)
Chromosome: chr10 Position: 9444002 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 87.10% | 12.90% |
All Indica | 799 | 87.11% | 12.89% |
All Japonica | 497 | 86.72% | 13.28% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 97.87% | 2.13% |
Indica II | 213 | 73.24% | 26.76% |
Indica Intermediate | 211 | 81.99% | 18.01% |
Temperate Japonica | 335 | 97.91% | 2.09% |
Tropical Japonica | 94 | 54.26% | 45.74% |
Japonica Intermediate | 68 | 76.47% | 23.53% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1009444002 | C->A | LOC_Os10g18720(LOC_Os10g18720.1) | INTRON |