Detailed information of SNP:
|
SNP ID:
sf1009445381(Gbrowse)
Chromosome: chr10 Position: 9445381 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 81.60% | 18.40% |
| All Indica | 749 | 68.62% | 31.38% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 352 | 75.28% | 24.72% |
| Indica II | 202 | 60.40% | 39.60% |
| Indica Intermediate | 195 | 65.13% | 34.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009445381 | G->A | INTERGENIC | None |