Detailed information of SNP:
|
SNP ID:
sf1009455488(Gbrowse)
Chromosome: chr10 Position: 9455488 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 91.27% | 8.73% |
| All Indica | 790 | 89.24% | 10.76% |
| All Japonica | 496 | 93.15% | 6.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 207 | 77.78% | 22.22% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009455488 | C->G | LOC_Os10g18740(LOC_Os10g18740.1) | Non-Synonymous SNP |