Detailed information of SNP:
|
SNP ID:
sf1009458880(Gbrowse)
Chromosome: chr10 Position: 9458880 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 80.96% | 19.04% |
| All Indica | 790 | 87.34% | 12.66% |
| All Japonica | 494 | 70.45% | 29.55% |
| Aus | 42 | 95.24% | 4.76% |
| Indica I | 368 | 97.55% | 2.45% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 75.22% | 24.78% |
| Tropical Japonica | 91 | 49.45% | 50.55% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009458880 | G->A | LOC_Os10g18740(LOC_Os10g18740.1) | Synonymous |