Detailed information of SNP:
|
SNP ID:
sf1009459699(Gbrowse)
Chromosome: chr10 Position: 9459699 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.05% | 15.95% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009459699 | G->A | LOC_Os10g18740(LOC_Os10g18740.1) | INTRON |