Detailed information of SNP:
SNP ID:
sf1009464496(Gbrowse)
Chromosome: chr10 Position: 9464496 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1405 | 95.09% | 4.91% |
All Indica | 799 | 98.00% | 2.00% |
All Japonica | 486 | 96.30% | 3.70% |
Aus | 67 | 61.19% | 38.81% |
Indica I | 375 | 97.33% | 2.67% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 85 | 81.18% | 18.82% |
Japonica Intermediate | 66 | 96.97% | 3.03% |
Group VI/Aromatic | 11 | 45.45% | 54.55% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1009464496 | C->T | LOC_Os10g18750(LOC_Os10g18750.1) | INTRON |