Detailed information of SNP:
|
SNP ID:
sf1009469395(Gbrowse)
Chromosome: chr10 Position: 9469395 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.59% | 34.41% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 497 | 35.41% | 64.59% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009469395 | C->T | INTERGENIC | None |