Detailed information of SNP:
|
SNP ID:
sf1009472230(Gbrowse)
Chromosome: chr10 Position: 9472230 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 68.23% | 31.77% |
| All Indica | 761 | 49.93% | 50.07% |
| All Japonica | 483 | 92.75% | 7.25% |
| Aus | 55 | 98.18% | 1.82% |
| Indica I | 352 | 41.76% | 58.24% |
| Indica II | 208 | 56.73% | 43.27% |
| Indica Intermediate | 201 | 57.21% | 42.79% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 84 | 80.95% | 19.05% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 6 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009472230 | C->T | INTERGENIC | None |