Detailed information of SNP:
|
SNP ID:
sf1009473012(Gbrowse)
Chromosome: chr10 Position: 9473012 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 67.45% | 32.55% |
| All Indica | 795 | 97.23% | 2.77% |
| All Japonica | 495 | 15.76% | 84.24% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009473012 | T->C | LOC_Os10g18770(LOC_Os10g18770.1) | Synonymous |