Detailed information of SNP:
|
SNP ID:
sf1009487100(Gbrowse)
Chromosome: chr10 Position: 9487100 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.17% | 35.83% |
| All Indica | 799 | 44.31% | 55.69% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 33.60% | 66.40% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009487100 | C->T | INTERGENIC | None |