Detailed information of SNP:
|
SNP ID:
sf1009488241(Gbrowse)
Chromosome: chr10 Position: 9488241 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 66.45% | 33.55% |
| All Indica | 796 | 57.41% | 42.59% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 212 | 48.11% | 51.89% |
| Indica Intermediate | 210 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009488241 | G->A | INTERGENIC | None |