Detailed information of SNP:
|
SNP ID:
sf1009493068(Gbrowse)
Chromosome: chr10 Position: 9493068 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 78.38% | 21.62% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 476 | 39.29% | 60.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 322 | 25.16% | 74.84% |
| Tropical Japonica | 88 | 79.55% | 20.45% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009493068 | T->G | LOC_Os10g18790(LOC_Os10g18790.1) | INTRON |