Detailed information of SNP:
|
SNP ID:
sf1009496244(Gbrowse)
Chromosome: chr10 Position: 9496244 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 94.87% | 5.13% |
| All Indica | 774 | 93.80% | 6.20% |
| All Japonica | 488 | 95.49% | 4.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 197 | 87.31% | 12.69% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009496244 | G->A | INTERGENIC | None |