Detailed information of SNP:
|
SNP ID:
sf1009525824(Gbrowse)
Chromosome: chr10 Position: 9525824 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 94.89% | 5.11% |
| All Indica | 773 | 91.46% | 8.54% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 362 | 88.95% | 11.05% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009525824 | C->T | INTERGENIC | None |