Detailed information of SNP:
|
SNP ID:
sf1009531049(Gbrowse)
Chromosome: chr10 Position: 9531049 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.97% | 39.03% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 496 | 11.49% | 88.51% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 334 | 4.19% | 95.81% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009531049 | T->C | INTERGENIC | None |