Detailed information of SNP:
|
SNP ID:
sf1009549250(Gbrowse)
Chromosome: chr10 Position: 9549250 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 70.69% | 29.31% |
| All Indica | 758 | 48.42% | 51.58% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 24.38% | 75.62% |
| Indica II | 197 | 78.68% | 21.32% |
| Indica Intermediate | 200 | 62.00% | 38.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009549250 | G->A | INTERGENIC | None |