Detailed information of SNP:
|
SNP ID:
sf1009566065(Gbrowse)
Chromosome: chr10 Position: 9566065 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 54.60% | 45.40% |
| All Indica | 781 | 37.13% | 62.87% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 27.84% | 72.16% |
| Indica II | 206 | 47.57% | 52.43% |
| Indica Intermediate | 205 | 43.41% | 56.59% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009566065 | C->T | INTERGENIC | None |