Detailed information of SNP:
|
SNP ID:
sf1009567327(Gbrowse)
Chromosome: chr10 Position: 9567327 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 75.52% | 24.48% |
| All Indica | 778 | 94.73% | 5.27% |
| All Japonica | 496 | 56.85% | 43.15% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 368 | 94.02% | 5.98% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009567327 | T->G | INTERGENIC | None |