Detailed information of SNP:
|
SNP ID:
sf1009568980(Gbrowse)
Chromosome: chr10 Position: 9568980 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 70.14% | 29.86% |
| All Indica | 789 | 87.83% | 12.17% |
| All Japonica | 481 | 51.77% | 48.23% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 207 | 84.06% | 15.94% |
| Temperate Japonica | 328 | 50.61% | 49.39% |
| Tropical Japonica | 87 | 51.72% | 48.28% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009568980 | C->T | INTERGENIC | None |