Detailed information of SNP:
|
SNP ID:
sf1009571058(Gbrowse)
Chromosome: chr10 Position: 9571058 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 51.64% | 48.36% |
| All Indica | 758 | 23.48% | 76.52% |
| All Japonica | 491 | 88.39% | 11.61% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 362 | 16.02% | 83.98% |
| Indica II | 195 | 29.23% | 70.77% |
| Indica Intermediate | 201 | 31.34% | 68.66% |
| Temperate Japonica | 333 | 94.29% | 5.71% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009571058 | G->A | INTERGENIC | None |