Detailed information of SNP:
|
SNP ID:
sf1009572562(Gbrowse)
Chromosome: chr10 Position: 9572562 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 98.08% | 1.92% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009572562 | A->G | INTERGENIC | None |