Detailed information of SNP:
|
SNP ID:
sf1009573430(Gbrowse)
Chromosome: chr10 Position: 9573430 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 58.06% | 41.94% |
| All Indica | 791 | 43.74% | 56.26% |
| All Japonica | 495 | 75.15% | 24.85% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 34.59% | 65.41% |
| Indica II | 210 | 52.86% | 47.14% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 334 | 79.94% | 20.06% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009573430 | T->C | LOC_Os10g18940(LOC_Os10g18940.1) | Non-Synonymous SNP |