Detailed information of SNP:
|
SNP ID:
sf1009574235(Gbrowse)
Chromosome: chr10 Position: 9574235 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 80.71% | 19.29% |
| All Indica | 795 | 70.69% | 29.31% |
| All Japonica | 492 | 93.70% | 6.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 208 | 65.38% | 34.62% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009574235 | T->C | LOC_Os10g18940(LOC_Os10g18940.1) | INTRON |