Detailed information of SNP:
|
SNP ID:
sf1009575262(Gbrowse)
Chromosome: chr10 Position: 9575262 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 54.82% | 45.18% |
| All Indica | 788 | 80.96% | 19.04% |
| All Japonica | 461 | 17.79% | 82.21% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 368 | 92.12% | 7.88% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 208 | 75.96% | 24.04% |
| Temperate Japonica | 303 | 13.86% | 86.14% |
| Tropical Japonica | 90 | 34.44% | 65.56% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009575262 | T->C | LOC_Os10g18940(LOC_Os10g18940.1) | Non-Synonymous SNP |