Detailed information of SNP:
|
SNP ID:
sf1009581230(Gbrowse)
Chromosome: chr10 Position: 9581230 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.67% | 10.33% |
| All Indica | 795 | 96.23% | 3.77% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009581230 | G->A | INTERGENIC | None |