Detailed information of SNP:
|
SNP ID:
sf1009581239(Gbrowse)
Chromosome: chr10 Position: 9581239 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.26% | 10.74% |
| All Indica | 795 | 86.04% | 13.96% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009581239 | G->A | INTERGENIC | None |