Detailed information of SNP:
|
SNP ID:
sf1009581740(Gbrowse)
Chromosome: chr10 Position: 9581740 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 61.99% | 38.01% |
| All Indica | 769 | 48.50% | 51.50% |
| All Japonica | 494 | 77.53% | 22.47% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 352 | 37.78% | 62.22% |
| Indica II | 208 | 58.17% | 41.83% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 333 | 82.28% | 17.72% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009581740 | C->T | LOC_Os10g18960(LOC_Os10g18960.1) | Non-Synonymous SNP |