Detailed information of SNP:
|
SNP ID:
sf1009582685(Gbrowse)
Chromosome: chr10 Position: 9582685 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.99% | 11.01% |
| All Indica | 797 | 85.32% | 14.68% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009582685 | G->T | LOC_Os10g18960(LOC_Os10g18960.1) | Non-Synonymous SNP |