Detailed information of SNP:
|
SNP ID:
sf1009591496(Gbrowse)
Chromosome: chr10 Position: 9591496 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 62.11% | 37.89% |
| All Indica | 789 | 48.29% | 51.71% |
| All Japonica | 494 | 78.54% | 21.46% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 368 | 38.32% | 61.68% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 208 | 56.25% | 43.75% |
| Temperate Japonica | 333 | 83.78% | 16.22% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009591496 | A->T | INTERGENIC | None |