Detailed information of SNP:
|
SNP ID:
sf1009593079(Gbrowse)
Chromosome: chr10 Position: 9593079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 88.28% | 11.72% |
| All Indica | 782 | 84.14% | 15.86% |
| All Japonica | 495 | 92.93% | 7.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 206 | 68.45% | 31.55% |
| Indica Intermediate | 205 | 78.54% | 21.46% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009593079 | G->A | LOC_Os10g18980(LOC_Os10g18980.1) | Non-Synonymous SNP |