Detailed information of SNP:
|
SNP ID:
sf1009596164(Gbrowse)
Chromosome: chr10 Position: 9596164 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.11% | 49.89% |
| All Indica | 799 | 83.23% | 16.77% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009596164 | G->T | LOC_Os10g18990(LOC_Os10g18990.1) | Synonymous |