Detailed information of SNP:
|
SNP ID:
sf1009620191(Gbrowse)
Chromosome: chr10 Position: 9620191 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 72.23% | 27.77% |
| All Indica | 799 | 58.70% | 41.30% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009620191 | C->T | LOC_Os10g19030(LOC_Os10g19030.1) | Synonymous |