Detailed information of SNP:
|
SNP ID:
sf1009632542(Gbrowse)
Chromosome: chr10 Position: 9632542 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 74.15% | 25.85% |
| All Indica | 797 | 56.84% | 43.16% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 35.39% | 64.61% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009632542 | A->G | INTERGENIC | None |