Detailed information of SNP:
|
SNP ID:
sf1009632921(Gbrowse)
Chromosome: chr10 Position: 9632921 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.00% | 42.00% |
| All Indica | 799 | 58.70% | 41.30% |
| All Japonica | 497 | 50.10% | 49.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 47.16% | 52.84% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009632921 | A->G | INTERGENIC | None |