Detailed information of SNP:
|
SNP ID:
sf1009637124(Gbrowse)
Chromosome: chr10 Position: 9637124 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.10% | 18.90% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 496 | 86.09% | 13.91% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009637124 | G->A | INTERGENIC | None |