Detailed information of SNP:
|
SNP ID:
sf1009638483(Gbrowse)
Chromosome: chr10 Position: 9638483 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 85.23% | 14.77% |
| All Indica | 796 | 76.51% | 23.49% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 210 | 35.71% | 64.29% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009638483 | T->C | INTERGENIC | None |