Detailed information of SNP:
|
SNP ID:
sf1009638520(Gbrowse)
Chromosome: chr10 Position: 9638520 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 85.07% | 14.93% |
| All Indica | 796 | 76.26% | 23.74% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 210 | 35.24% | 64.76% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009638520 | C->A | INTERGENIC | None |