Detailed information of SNP:
|
SNP ID:
sf1009649193(Gbrowse)
Chromosome: chr10 Position: 9649193 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.21% | 49.79% |
| All Indica | 797 | 15.81% | 84.19% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 5.87% | 94.13% |
| Indica II | 212 | 28.30% | 71.70% |
| Indica Intermediate | 210 | 20.95% | 79.05% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009649193 | G->A | INTERGENIC | None |