Detailed information of SNP:
|
SNP ID:
sf1009753725(Gbrowse)
Chromosome: chr10 Position: 9753725 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 90.77% | 9.23% |
| All Indica | 750 | 90.67% | 9.33% |
| All Japonica | 493 | 94.32% | 5.68% |
| Aus | 50 | 76.00% | 24.00% |
| Indica I | 337 | 87.83% | 12.17% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 72.83% | 27.17% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009753725 | T->C | LOC_Os10g19290(LOC_Os10g19290.1) | Non-Synonymous SNP |