Detailed information of SNP:
|
SNP ID:
sf1009775165(Gbrowse)
Chromosome: chr10 Position: 9775165 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1298 | 86.75% | 13.25% |
| All Indica | 709 | 77.15% | 22.85% |
| All Japonica | 469 | 99.15% | 0.85% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 336 | 68.45% | 31.55% |
| Indica II | 191 | 94.24% | 5.76% |
| Indica Intermediate | 182 | 75.27% | 24.73% |
| Temperate Japonica | 328 | 99.39% | 0.61% |
| Tropical Japonica | 83 | 97.59% | 2.41% |
| Japonica Intermediate | 58 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009775165 | T->C | INTERGENIC | None |