Detailed information of SNP:
|
SNP ID:
sf1009792955(Gbrowse)
Chromosome: chr10 Position: 9792955 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 87.03% | 12.97% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009792955 | G->A | LOC_Os10g19334(LOC_Os10g19334.1) | INTRON |
| sf1009792955 | G->A | LOC_Os10g19334(LOC_Os10g19334.2) | INTRON |