Detailed information of SNP:
|
SNP ID:
sf1009815794(Gbrowse)
Chromosome: chr10 Position: 9815794 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 61.19% | 38.81% |
| All Indica | 790 | 90.63% | 9.37% |
| All Japonica | 487 | 7.80% | 92.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 370 | 91.35% | 8.65% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 89 | 23.60% | 76.40% |
| Japonica Intermediate | 65 | 16.92% | 83.08% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009815794 | G->A | LOC_Os10g19830(LOC_Os10g19830.1) | Synonymous |