Detailed information of SNP:
|
SNP ID:
sf1009816488(Gbrowse)
Chromosome: chr10 Position: 9816488 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 61.60% | 38.40% |
| All Indica | 784 | 92.47% | 7.53% |
| All Japonica | 495 | 8.08% | 91.92% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 208 | 85.10% | 14.90% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009816488 | C->A | LOC_Os10g19830(LOC_Os10g19830.1) | INTRON |