Detailed information of SNP:
|
SNP ID:
sf1009825775(Gbrowse)
Chromosome: chr10 Position: 9825775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.13% | 9.87% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009825775 | C->T | LOC_Os10g19850(LOC_Os10g19850.1) | INTRON |