Detailed information of SNP:
|
SNP ID:
sf1009864609(Gbrowse)
Chromosome: chr10 Position: 9864609 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.52% | 6.48% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009864609 | C->T | LOC_Os10g19890(LOC_Os10g19890.1) | INTRON |