Detailed information of SNP:
|
SNP ID:
sf1009874898(Gbrowse)
Chromosome: chr10 Position: 9874898 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 82.78% | 17.22% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 496 | 81.25% | 18.75% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009874898 | C->T | INTERGENIC | None |