Detailed information of SNP:
|
SNP ID:
sf1009877439(Gbrowse)
Chromosome: chr10 Position: 9877439 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 67.07% | 32.93% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 25.15% | 74.85% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009877439 | A->T | INTERGENIC | None |