Detailed information of SNP:
|
SNP ID:
sf1009939805(Gbrowse)
Chromosome: chr10 Position: 9939805 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1299 | 93.61% | 6.39% |
| All Indica | 684 | 88.16% | 11.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 296 | 79.39% | 20.61% |
| Indica II | 199 | 96.98% | 3.02% |
| Indica Intermediate | 189 | 92.59% | 7.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009939805 | G->A | INTERGENIC | None |